CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.80 rna-evm.model.Chr16.80 Chr16 2183513 2196881 PREDICTED: Lactase-phlorizin hydrolase GO:0004553;GO:0005975 K01229
gene-evm.TU.Chr16.800 rna-evm.model.Chr16.800 Chr16 25246901 25260127 PREDICTED: Bleomycin hydrolase GO:0004197;GO:0006508 K01372
gene-evm.TU.Chr16.801 rna-evm.model.Chr16.801 Chr16 25265040 25270260 PREDICTED: Protein ANKUB1 GO:0005515 K12166
gene-evm.TU.Chr16.802 rna-evm.model.Chr16.802 Chr16 25270419 25283020 uncharacterized protein nan nan
gene-evm.TU.Chr16.803 rna-evm.model.Chr16.803 Chr16 25291897 25312716 PREDICTED: Histone-lysine N-methyltransferase SETD1B-A GO:0003676;GO:0005515 K11422
gene-evm.TU.Chr16.804 rna-evm.model.Chr16.804 Chr16 25313008 25340225 PREDICTED: titin-like nan K04025
gene-evm.TU.Chr16.805 rna-evm.model.Chr16.805 Chr16 25345285 25350051 uncharacterized protein nan nan
gene-evm.TU.Chr16.806 rna-evm.model.Chr16.806 Chr16 25354622 25363289 PREDICTED: Solute carrier family 28 member 3 GO:0005337;GO:0016020;GO:1901642 K11536
gene-evm.TU.Chr16.807 rna-evm.model.Chr16.807 Chr16 25367018 25374111 uncharacterized protein nan K02373
gene-evm.TU.Chr16.81 rna-evm.model.Chr16.81 Chr16 2196977 2268142 PREDICTED: Lactase-phlorizin hydrolase GO:0004553;GO:0005975 K01229

For more detailed data, you can explore the Download section to access the full dataset.