CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.2557 rna-evm.model.Chr1.2557 Chr1 80457477 80502469 PREDICTED: Cyclin-dependent kinase-like 5 GO:0004672;GO:0005524;GO:0006468 K08824
gene-evm.TU.Chr1.2558 rna-evm.model.Chr1.2558 Chr1 80513775 80566692 PREDICTED: La-related protein 1 GO:0003723;GO:0005634;GO:0006396;GO:1990904 K18757
gene-evm.TU.Chr1.2559 rna-evm.model.Chr1.2559 Chr1 80570261 80587859 PREDICTED: B-box type zinc finger protein ncl-1 GO:0005515;GO:0008270;GO:0046872 K11997
gene-evm.TU.Chr1.256 rna-evm.model.Chr1.256 Chr1 7506279 7507919 PREDICTED: Proton-coupled folate transporter GO:0016020;GO:0055085 K14613
gene-evm.TU.Chr1.2560 rna-evm.model.Chr1.2560 Chr1 80598323 80603038 PREDICTED: Probable bifunctional dTTP/UTP pyrophosphatase/methyltransferase protein GO:0047429 K25435
gene-evm.TU.Chr1.2561 rna-evm.model.Chr1.2561.1 Chr1 80610597 80620541 PREDICTED: Kelch-like protein 8 GO:0005515;GO:0016567;GO:0031463 K10446
gene-evm.TU.Chr1.2562 rna-evm.model.Chr1.2562 Chr1 80634244 80635759 PREDICTED: NF-kappa-B inhibitor epsilon GO:0005515 K05872
gene-evm.TU.Chr1.2563 rna-evm.model.Chr1.2563 Chr1 80639155 80648570 PREDICTED: sporulation-specific protein 15-like nan K09892
gene-evm.TU.Chr1.2564 rna-evm.model.Chr1.2564 Chr1 80649789 80663366 PREDICTED: Beta-hexosaminidase GO:0004553;GO:0004563;GO:0005975 K12373
gene-evm.TU.Chr1.2566 rna-evm.model.Chr1.2566 Chr1 80721739 80728287 uncharacterized protein GO:0043531 K13459

For more detailed data, you can explore the Download section to access the full dataset.