CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.2567 rna-evm.model.Chr1.2567 Chr1 80732865 80736805 PREDICTED: myosin heavy chain nan K22257
gene-evm.TU.Chr1.2568 rna-evm.model.Chr1.2568 Chr1 80738846 80744240 uncharacterized protein nan K11244
gene-evm.TU.Chr1.2569 rna-evm.model.Chr1.2569 Chr1 80748191 80751534 PREDICTED: myosin heavy chain nan K07180
gene-evm.TU.Chr1.257 rna-evm.model.Chr1.257 Chr1 7514456 7516096 PREDICTED: Proton-coupled folate transporter GO:0016020;GO:0055085 K14613
gene-evm.TU.Chr1.2570_evm.TU.Chr1.2571 rna-evm.model.Chr1.2570_evm.model.Chr1.2571 Chr1 80756068 80767296 PREDICTED: Rho-associated protein kinase 2 [EC:2.7.11.1] nan K22257
gene-evm.TU.Chr1.2572 rna-evm.model.Chr1.2572 Chr1 80769500 80786320 PREDICTED: myosin heavy chain nan K16487
gene-evm.TU.Chr1.2573 rna-evm.model.Chr1.2573 Chr1 80787507 80791124 PREDICTED: Heat shock 70 kDa protein 12B nan K04043
gene-evm.TU.Chr1.2574 rna-evm.model.Chr1.2574 Chr1 80792062 80798616 PREDICTED: Heat shock 70 kDa protein 12B nan K04043
gene-evm.TU.Chr1.2575 rna-evm.model.Chr1.2575 Chr1 80800105 80838801 PREDICTED: Heat shock 70 kDa protein 12B nan K04043
gene-evm.TU.Chr1.2576 rna-evm.model.Chr1.2576 Chr1 80852394 80872706 PREDICTED: Protein mono-ADP-ribosyltransferase PARP14 GO:0003950 K15261

For more detailed data, you can explore the Download section to access the full dataset.