CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.79 rna-evm.model.Chr16.79 Chr16 2119644 2176469 PREDICTED: neurofilament heavy polypeptide nan K25129
gene-evm.TU.Chr16.790 rna-evm.model.Chr16.790 Chr16 24901318 24912440 PREDICTED: Probable tRNA (uracil-O(2)-)-methyltransferase GO:0008168;GO:0046872 K15447
gene-evm.TU.Chr16.791 rna-evm.model.Chr16.791 Chr16 24912707 24920759 uncharacterized protein nan K23544
gene-evm.TU.Chr16.792 rna-evm.model.Chr16.792 Chr16 24923755 24928329 PREDICTED: Sulfotransferase 1A2 GO:0008146 K01025
gene-evm.TU.Chr16.793 rna-evm.model.Chr16.793 Chr16 24933059 24935946 PREDICTED: Sulfotransferase 1A2 GO:0008146 K22523
gene-evm.TU.Chr16.794 rna-evm.model.Chr16.794 Chr16 24951477 24955501 PREDICTED: Globin GO:0005506;GO:0015671;GO:0019825;GO:0020037 K21894
gene-evm.TU.Chr16.795 rna-evm.model.Chr16.795 Chr16 24990902 24998785 PREDICTED: Solute carrier family 28 member 3 GO:0005337;GO:0016020;GO:1901642 K11536
gene-evm.TU.Chr16.796 rna-evm.model.Chr16.796 Chr16 25000272 25014074 PREDICTED: Solute carrier family 13 member 5 GO:0005215;GO:0016020;GO:0055085 K14445
gene-evm.TU.Chr16.797 rna-evm.model.Chr16.797 Chr16 25037378 25048444 PREDICTED: Furin-1 GO:0004252;GO:0006508 K08672
gene-evm.TU.Chr16.798 rna-evm.model.Chr16.798 Chr16 25145305 25198724 PREDICTED: Proprotein convertase subtilisin/kexin type 6 GO:0004252;GO:0006508 K01349

For more detailed data, you can explore the Download section to access the full dataset.