CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.779 rna-evm.model.Chr16.779 Chr16 24473304 24474374 PREDICTED: Endo-1,4-beta-xylanase B GO:0030317 K26029
gene-evm.TU.Chr16.78 rna-evm.model.Chr16.78 Chr16 1967818 2103251 PREDICTED: Hemicentin-2 GO:0004672;GO:0005515;GO:0005524;GO:0006468 K17341
gene-evm.TU.Chr16.780 rna-evm.model.Chr16.780 Chr16 24475459 24476481 PREDICTED: Endo-1,4-beta-xylanase B GO:0030317 K26029
gene-evm.TU.Chr16.781 rna-evm.model.Chr16.781 Chr16 24479071 24481941 PREDICTED: G protein-activated inward rectifier potassium channel 4 GO:0005242;GO:0006813;GO:0016020 K05000
gene-evm.TU.Chr16.782 rna-evm.model.Chr16.782 Chr16 24537387 24557363 PREDICTED: PR domain zinc finger protein 14 GO:0003676;GO:0005515 K24646
gene-evm.TU.Chr16.784 rna-evm.model.Chr16.784 Chr16 24615905 24617771 PREDICTED: cyclic GMP-AMP synthase [EC:2.7.7.86] nan K23092
gene-evm.TU.Chr16.785 rna-evm.model.Chr16.785 Chr16 24621111 24629741 PREDICTED: Uncharacterized protein C56G2.4 nan K06910
gene-evm.TU.Chr16.786_evm.TU.Chr16.787 rna-evm.model.Chr16.786_evm.model.Chr16.787 Chr16 24632605 24736593 PREDICTED: Tetratricopeptide repeat protein 28 GO:0005515 K24936
gene-evm.TU.Chr16.788 rna-evm.model.Chr16.788 Chr16 24740092 24784660 PREDICTED: Dynein beta chain, ciliary GO:0003777;GO:0005524;GO:0007018;GO:0030286 K10408
gene-evm.TU.Chr16.789 rna-evm.model.Chr16.789 Chr16 24792813 24836453 PREDICTED: Dynein beta chain, ciliary GO:0003777;GO:0007018;GO:0030286 K10408

For more detailed data, you can explore the Download section to access the full dataset.