CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.767 rna-evm.model.Chr16.767 Chr16 24234686 24275633 PREDICTED: Collagen alpha-3(VI) chain GO:0005515 K24498
gene-evm.TU.Chr16.768 rna-evm.model.Chr16.768 Chr16 24277666 24299855 PREDICTED: ABC transporter G family member 14 GO:0005524;GO:0016020;GO:0016887 K05681
gene-evm.TU.Chr16.77 rna-evm.model.Chr16.77 Chr16 1854178 1858711 uncharacterized protein nan K07494
gene-evm.TU.Chr16.770 rna-evm.model.Chr16.770 Chr16 24302681 24330882 PREDICTED: Clathrin heavy chain 1 GO:0005198;GO:0006886;GO:0016192;GO:0030130;GO:0030132 K04646
gene-evm.TU.Chr16.772 rna-evm.model.Chr16.772 Chr16 24346466 24363513 PREDICTED: Rab5 GDP/GTP exchange factor GO:0003677;GO:0008270 K20131
gene-evm.TU.Chr16.773 rna-evm.model.Chr16.773 Chr16 24373012 24375905 uncharacterized protein nan K24798
gene-evm.TU.Chr16.774 rna-evm.model.Chr16.774 Chr16 24376112 24381037 uncharacterized protein nan nan
gene-evm.TU.Chr16.776 rna-evm.model.Chr16.776.2 Chr16 24414051 24455562 PREDICTED: Telomerase-binding protein EST1A nan K11124
gene-evm.TU.Chr16.777 rna-evm.model.Chr16.777 Chr16 24455649 24463619 PREDICTED: Spermatogenesis-associated protein 22 GO:0000711;GO:0007129;GO:0007276 K22421
gene-evm.TU.Chr16.778 rna-evm.model.Chr16.778 Chr16 24464128 24468270 PREDICTED: Inward rectifier potassium channel 18 GO:0005242;GO:0006813;GO:0016020 K05000

For more detailed data, you can explore the Download section to access the full dataset.