CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.746 rna-evm.model.Chr16.746 Chr16 23878138 23896215 PREDICTED: PR domain zinc finger protein 14 GO:0003676;GO:0005515 K24646
gene-evm.TU.Chr16.747 rna-evm.model.Chr16.747 Chr16 23911176 23914634 PREDICTED: Protein toll GO:0005515 K18809
gene-evm.TU.Chr16.748 rna-evm.model.Chr16.748 Chr16 23917942 23921391 PREDICTED: Protein toll GO:0005515;GO:0007165 K18809
gene-evm.TU.Chr16.749 rna-evm.model.Chr16.749 Chr16 23933314 23934725 uncharacterized protein nan nan
gene-evm.TU.Chr16.75 rna-evm.model.Chr16.75 Chr16 1841921 1843378 uncharacterized protein GO:0008270 nan
gene-evm.TU.Chr16.751 rna-evm.model.Chr16.751 Chr16 23943604 23982593 PREDICTED: Septin-2B GO:0005525;GO:0051301 K16942
gene-evm.TU.Chr16.752 rna-evm.model.Chr16.752 Chr16 23991988 23993563 PREDICTED: UPF0046 protein K07C11.7 GO:0016787 K07096
gene-evm.TU.Chr16.753 rna-evm.model.Chr16.753 Chr16 23999585 24003077 uncharacterized protein nan K13412
gene-evm.TU.Chr16.754 rna-evm.model.Chr16.754 Chr16 24002152 24004245 PREDICTED: CUB and sushi domain-containing protein 1 nan K17305
gene-evm.TU.Chr16.755 rna-evm.model.Chr16.755 Chr16 24008901 24010662 uncharacterized protein nan K13412

For more detailed data, you can explore the Download section to access the full dataset.