CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.734 rna-evm.model.Chr16.734 Chr16 23711579 23716942 PREDICTED: Rab5 GDP/GTP exchange factor nan K20131
gene-evm.TU.Chr16.735 rna-evm.model.Chr16.735 Chr16 23724248 23727297 uncharacterized protein nan K24798
gene-evm.TU.Chr16.736 rna-evm.model.Chr16.736 Chr16 23727502 23732227 uncharacterized protein nan nan
gene-evm.TU.Chr16.737 rna-evm.model.Chr16.737 Chr16 23761423 23797352 PREDICTED: Telomerase-binding protein EST1A nan K11124
gene-evm.TU.Chr16.739 rna-evm.model.Chr16.739 Chr16 23806628 23810781 PREDICTED: Inward rectifier potassium channel 18 GO:0005242;GO:0006813;GO:0016020 K05000
gene-evm.TU.Chr16.74 rna-evm.model.Chr16.74 Chr16 1840762 1841919 PREDICTED: THAP domain-containing protein 11 nan K23222
gene-evm.TU.Chr16.741 rna-evm.model.Chr16.741 Chr16 23817195 23817686 PREDICTED: sentrin-specific protease 2 (axin associating molecule) [EC:3.4.22.68] nan K26029
gene-evm.TU.Chr16.742 rna-evm.model.Chr16.742 Chr16 23817728 23818219 PREDICTED: Signal transducer and activator of transcription 2 nan K14479
gene-evm.TU.Chr16.744 rna-evm.model.Chr16.744 Chr16 23823992 23826822 PREDICTED: G protein-activated inward rectifier potassium channel 4 GO:0005242;GO:0006813;GO:0016020 K05000
gene-evm.TU.Chr16.745 rna-evm.model.Chr16.745 Chr16 23853657 23868300 uncharacterized protein nan K24595

For more detailed data, you can explore the Download section to access the full dataset.