CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.724 rna-evm.model.Chr16.724 Chr16 23246533 23247214 PREDICTED: Transposable element Tcb2 transposase GO:0003677;GO:0006313;GO:0015074 K07494
gene-evm.TU.Chr16.725 rna-evm.model.Chr16.725 Chr16 23327622 23364204 PREDICTED: Uncharacterized protein C56G2.4 nan K06910
gene-evm.TU.Chr16.726 rna-evm.model.Chr16.726 Chr16 23508158 23520054 PREDICTED: Sin3 histone deacetylase corepressor complex component SDS3 nan K19201
gene-evm.TU.Chr16.727 rna-evm.model.Chr16.727 Chr16 23520580 23524088 uncharacterized protein nan nan
gene-evm.TU.Chr16.728 rna-evm.model.Chr16.728 Chr16 23524733 23532163 PREDICTED: Derlin-2 nan K13989
gene-evm.TU.Chr16.729 rna-evm.model.Chr16.729 Chr16 23537411 23538505 uncharacterized protein nan K23644
gene-evm.TU.Chr16.73 rna-evm.model.Chr16.73 Chr16 1839906 1840679 PREDICTED: inner nuclear membrane protein Man1 nan K21233
gene-evm.TU.Chr16.731 rna-evm.model.Chr16.731 Chr16 23603228 23641134 PREDICTED: Collagen alpha-3(VI) chain GO:0005515 K24498
gene-evm.TU.Chr16.732 rna-evm.model.Chr16.732 Chr16 23645092 23658559 PREDICTED: ABC transporter G family member 14 GO:0005524;GO:0016020;GO:0016887 K05681
gene-evm.TU.Chr16.733 rna-evm.model.Chr16.733 Chr16 23665437 23697650 PREDICTED: Clathrin heavy chain 1 GO:0005198;GO:0006886;GO:0016192;GO:0030130;GO:0030132 K04646

For more detailed data, you can explore the Download section to access the full dataset.