CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.715 rna-evm.model.Chr16.715 Chr16 23002151 23023199 PREDICTED: Glutathione hydrolase 1 proenzyme GO:0006751;GO:0036374 K18592
gene-evm.TU.Chr16.716 rna-evm.model.Chr16.716 Chr16 23028308 23043485 PREDICTED: All-trans-retinol 13,14-reductase nan K09516
gene-evm.TU.Chr16.717 rna-evm.model.Chr16.717 Chr16 23044742 23056958 PREDICTED: F-box/WD repeat-containing protein 8 GO:0005515 K10264
gene-evm.TU.Chr16.718 rna-evm.model.Chr16.718 Chr16 23066162 23086432 PREDICTED: Sulfotransferase family cytosolic 1B member 1 GO:0008146 K01025
gene-evm.TU.Chr16.719 rna-evm.model.Chr16.719 Chr16 23089995 23103287 PREDICTED: Sulfotransferase family cytosolic 1B member 1 GO:0008146 K01025
gene-evm.TU.Chr16.72 rna-evm.model.Chr16.72 Chr16 1838576 1839555 PREDICTED: KRAB domain-containing zinc finger protein GO:0003676 K23204
gene-evm.TU.Chr16.720 rna-evm.model.Chr16.720 Chr16 23108653 23114554 PREDICTED: Sulfotransferase family cytosolic 1B member 1 GO:0008146 K01025
gene-evm.TU.Chr16.721 rna-evm.model.Chr16.721 Chr16 23128986 23141343 PREDICTED: F-box/WD repeat-containing protein 8 GO:0005515 K10264
gene-evm.TU.Chr16.722 rna-evm.model.Chr16.722 Chr16 23152366 23165793 PREDICTED: All-trans-retinol 13,14-reductase nan K09516
gene-evm.TU.Chr16.723 rna-evm.model.Chr16.723 Chr16 23171813 23176650 PREDICTED: Glutathione hydrolase 1 proenzyme GO:0006751;GO:0036374 K18592

For more detailed data, you can explore the Download section to access the full dataset.