CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.701 rna-evm.model.Chr16.701 Chr16 22527763 22551431 PREDICTED: MDIS1-interacting receptor like kinase 1 GO:0004672;GO:0005524;GO:0006468 K04733
gene-evm.TU.Chr16.703 rna-evm.model.Chr16.703 Chr16 22606635 22693094 PREDICTED: Serine/threonine-protein kinase-like protein At3g51990 GO:0004672;GO:0005524;GO:0006468;GO:0042981 K04733
gene-evm.TU.Chr16.704 rna-evm.model.Chr16.704 Chr16 22717212 22722219 uncharacterized protein GO:0016020 K19289
gene-evm.TU.Chr16.707 rna-evm.model.Chr16.707 Chr16 22830237 22831610 PREDICTED: Pyroglutamylated RF-amide peptide receptor GO:0004930;GO:0007186;GO:0016020 K08375
gene-evm.TU.Chr16.708 rna-evm.model.Chr16.708 Chr16 22839803 22843760 PREDICTED: Guanylate-binding protein 1 GO:0003924;GO:0005525 K20899
gene-evm.TU.Chr16.71 rna-evm.model.Chr16.71 Chr16 1816582 1830980 uncharacterized protein nan K25839
gene-evm.TU.Chr16.710 rna-evm.model.Chr16.710 Chr16 22878576 22886250 PREDICTED: Guanylate-binding protein 1 GO:0003924;GO:0005525 K20899
gene-evm.TU.Chr16.711 rna-evm.model.Chr16.711 Chr16 22905858 22915045 PREDICTED: Glutathione hydrolase 1 proenzyme GO:0006751;GO:0036374 K18592
gene-evm.TU.Chr16.712 rna-evm.model.Chr16.712 Chr16 22920978 22921754 PREDICTED: protein kinase D [EC:2.7.11.13] nan K20283
gene-evm.TU.Chr16.714 rna-evm.model.Chr16.714 Chr16 22979096 22995922 PREDICTED: Glutathione hydrolase 1 proenzyme GO:0006751;GO:0036374 K18592

For more detailed data, you can explore the Download section to access the full dataset.