CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.686 rna-evm.model.Chr16.686 Chr16 21627805 21634101 PREDICTED: Growth hormone secretagogue receptor type 1 GO:0004930;GO:0007186;GO:0016020 K08428
gene-evm.TU.Chr16.69 rna-evm.model.Chr16.69 Chr16 1757958 1786769 PREDICTED: Extracellular tyrosine-protein kinase PKDCC nan K17548
gene-evm.TU.Chr16.693 rna-evm.model.Chr16.693 Chr16 22350361 22361013 PREDICTED: Sialin GO:0016020;GO:0055085 K12301
gene-evm.TU.Chr16.694 rna-evm.model.Chr16.694 Chr16 22371623 22405545 PREDICTED: Scavenger receptor cysteine-rich type 1 protein M130 GO:0005044;GO:0016020 K09624
gene-evm.TU.Chr16.695 rna-evm.model.Chr16.695 Chr16 22436774 22449759 PREDICTED: Tumor susceptibility gene 101 protein GO:0036211;GO:0015031 K12183
gene-evm.TU.Chr16.696 rna-evm.model.Chr16.696 Chr16 22467132 22468214 PREDICTED: Tigger transposable element-derived protein 4 nan K11496
gene-evm.TU.Chr16.697 rna-evm.model.Chr16.697 Chr16 22472161 22474803 PREDICTED: sentrin-specific protease 1 [EC:3.4.22.68] nan K07184
gene-evm.TU.Chr16.7 rna-evm.model.Chr16.7 Chr16 296407 299737 uncharacterized protein nan K22198
gene-evm.TU.Chr16.70 rna-evm.model.Chr16.70 Chr16 1796136 1814492 PREDICTED: Protocadherin Fat 4 GO:0005509;GO:0007156;GO:0016020 K16669
gene-evm.TU.Chr16.700 rna-evm.model.Chr16.700 Chr16 22503175 22509674 PREDICTED: Transmembrane GTPase fzo nan K21356

For more detailed data, you can explore the Download section to access the full dataset.