CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.2546 rna-evm.model.Chr1.2546 Chr1 80157634 80230815 PREDICTED: Inhibitor of growth protein 1 nan K15261
gene-evm.TU.Chr1.2547 rna-evm.model.Chr1.2547 Chr1 80232590 80247982 PREDICTED: E3 ubiquitin-protein ligase MYCBP2 nan K10693
gene-evm.TU.Chr1.2548 rna-evm.model.Chr1.2548 Chr1 80249721 80251573 uncharacterized protein nan nan
gene-evm.TU.Chr1.2549 rna-evm.model.Chr1.2549 Chr1 80253921 80255864 uncharacterized protein nan K03789
gene-evm.TU.Chr1.255 rna-evm.model.Chr1.255 Chr1 7473915 7495341 PREDICTED: Kelch-like protein 26 GO:0005515 K10463
gene-evm.TU.Chr1.2550 rna-evm.model.Chr1.2550 Chr1 80257519 80279668 PREDICTED: enhancer of mRNA-decapping protein 4 nan K03789
gene-evm.TU.Chr1.2552 rna-evm.model.Chr1.2552 Chr1 80391397 80411836 PREDICTED: Isopenicillin N synthase GO:0016491;GO:0055114 K04125
gene-evm.TU.Chr1.2554 rna-evm.model.Chr1.2554 Chr1 80431567 80433304 PREDICTED: Mannosyl phosphorylinositol ceramide synthase SUR1 nan K22721
gene-evm.TU.Chr1.2555 rna-evm.model.Chr1.2555 Chr1 80439993 80441054 PREDICTED: Inositol phosphoceramide mannosyltransferase 3 nan K22721
gene-evm.TU.Chr1.2556 rna-evm.model.Chr1.2556 Chr1 80443546 80451752 PREDICTED: Urea-proton symporter DUR3 GO:0016020;GO:0022857;GO:0055085 K20989

For more detailed data, you can explore the Download section to access the full dataset.