CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.660 rna-evm.model.Chr16.660 Chr16 20925893 20946908 PREDICTED: Protein dispatched homolog 1 GO:0007224;GO:0016020 K24680
gene-evm.TU.Chr16.661 rna-evm.model.Chr16.661 Chr16 20970885 21005689 PREDICTED: Solute carrier family 28 member 3 GO:0005337;GO:0016020;GO:1901642 K11536
gene-evm.TU.Chr16.662 rna-evm.model.Chr16.662 Chr16 21031460 21047596 PREDICTED: Protein dispatched homolog 1 GO:0016020 K24680
gene-evm.TU.Chr16.663 rna-evm.model.Chr16.663 Chr16 21050591 21051644 PREDICTED: Solute carrier family 28 member 3 GO:0005337;GO:0016020;GO:1901642 K11536
gene-evm.TU.Chr16.666 rna-evm.model.Chr16.666 Chr16 21074294 21085197 PREDICTED: Peroxisomal membrane protein 2 GO:0016020 K13347
gene-evm.TU.Chr16.667 rna-evm.model.Chr16.667 Chr16 21098097 21106453 PREDICTED: Integral membrane protein DGCR2/IDD GO:0005515 K24521
gene-evm.TU.Chr16.668 rna-evm.model.Chr16.668.1 Chr16 21111907 21170691 PREDICTED: Nuclear receptor corepressor 1 nan K04650
gene-evm.TU.Chr16.669 rna-evm.model.Chr16.669 Chr16 21171694 21177766 PREDICTED: Tubulin delta chain GO:0003924;GO:0005200;GO:0005525;GO:0005874;GO:0007017 K10390
gene-evm.TU.Chr16.670 rna-evm.model.Chr16.670 Chr16 21183275 21194159 PREDICTED: Solute carrier family 15 member 4 GO:0016020;GO:0022857;GO:0055085 K14638
gene-evm.TU.Chr16.671 rna-evm.model.Chr16.671 Chr16 21194595 21242596 PREDICTED: Transmembrane protein 132C nan K17599

For more detailed data, you can explore the Download section to access the full dataset.