CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.637 rna-evm.model.Chr16.637 Chr16 19750402 19767169 PREDICTED: Sodium/calcium exchanger regulatory protein 1 GO:0004252;GO:0006508;GO:0008289 K08752
gene-evm.TU.Chr16.638 rna-evm.model.Chr16.638 Chr16 19774701 19775348 PREDICTED: Transposable element Tcb1 transposase nan K07494
gene-evm.TU.Chr16.639 rna-evm.model.Chr16.639 Chr16 19810319 19868555 PREDICTED: Monocarboxylate transporter 12 GO:0016020;GO:0055085 K08189
gene-evm.TU.Chr16.640 rna-evm.model.Chr16.640 Chr16 19884652 19886990 PREDICTED: Galectin-3-binding protein GO:0005044;GO:0016020 K17300
gene-evm.TU.Chr16.641 rna-evm.model.Chr16.641 Chr16 19894995 19908100 PREDICTED: Sulfotransferase 1C4 GO:0008146 K01025
gene-evm.TU.Chr16.643 rna-evm.model.Chr16.643 Chr16 19960064 19971351 uncharacterized protein nan K06789
gene-evm.TU.Chr16.645 rna-evm.model.Chr16.645 Chr16 20099503 20112209 uncharacterized protein nan K07984
gene-evm.TU.Chr16.647 rna-evm.model.Chr16.647 Chr16 20370670 20371349 PREDICTED: Eukaryotic translation initiation factor 3 subunit C GO:0003723;GO:0003743;GO:0005852;GO:0006413;GO:0031369 K03252
gene-evm.TU.Chr16.648 rna-evm.model.Chr16.648 Chr16 20371861 20389920 PREDICTED: Eukaryotic translation initiation factor 3 subunit C GO:0003723;GO:0003743;GO:0005852;GO:0006413;GO:0031369 K03252
gene-evm.TU.Chr16.649 rna-evm.model.Chr16.649 Chr16 20478230 20479417 PREDICTED: p24 family protein gamma-2 nan K03904

For more detailed data, you can explore the Download section to access the full dataset.