CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.612 rna-evm.model.Chr16.612 Chr16 18944619 18961527 PREDICTED: Iduronate 2-sulfatase GO:0008484 K01136
gene-evm.TU.Chr16.613 rna-evm.model.Chr16.613 Chr16 18970377 18971725 PREDICTED: Iduronate 2-sulfatase GO:0008484 K01136
gene-evm.TU.Chr16.614 rna-evm.model.Chr16.614 Chr16 18977273 18978772 PREDICTED: Iduronate 2-sulfatase GO:0008484 K01136
gene-evm.TU.Chr16.615 rna-evm.model.Chr16.615 Chr16 19099448 19103766 PREDICTED: Putative nuclease HARBI1 nan K23222
gene-evm.TU.Chr16.616 rna-evm.model.Chr16.616 Chr16 19104944 19105718 PREDICTED: nuclear apoptosis-inducing factor 1 nan K23221
gene-evm.TU.Chr16.617 rna-evm.model.Chr16.617 Chr16 19120335 19187536 PREDICTED: Somatomedin-B and thrombospondin type-1 domain-containing protein GO:0005044;GO:0006955;GO:0030247 K24427
gene-evm.TU.Chr16.618 rna-evm.model.Chr16.618 Chr16 19189678 19191934 PREDICTED: Alkali-sensitive linkage protein 1 nan K21000
gene-evm.TU.Chr16.619 rna-evm.model.Chr16.619 Chr16 19229177 19266985 PREDICTED: Anaphase-promoting complex subunit 7 GO:0005515;GO:0052861 K03354
gene-evm.TU.Chr16.620 rna-evm.model.Chr16.620 Chr16 19267579 19270783 uncharacterized protein nan K17713
gene-evm.TU.Chr16.621 rna-evm.model.Chr16.621 Chr16 19318618 19332184 PREDICTED: TRMT1-like protein GO:0003723;GO:0004809;GO:0008033 K00555

For more detailed data, you can explore the Download section to access the full dataset.