CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.599 rna-evm.model.Chr16.599 Chr16 18660893 18670522 PREDICTED: ADP-ribose pyrophosphatase, mitochondrial GO:0005739;GO:0016787;GO:0047631 K13988
gene-evm.TU.Chr16.6 rna-evm.model.Chr16.6 Chr16 232212 280699 PREDICTED: eIF-2-alpha kinase activator GCN1 GO:0006417;GO:0019887;GO:0019901;GO:0033674;GO:0043022 K03235
gene-evm.TU.Chr16.600 rna-evm.model.Chr16.600 Chr16 18682072 18687621 PREDICTED: Centromere protein M nan K11505
gene-evm.TU.Chr16.601 rna-evm.model.Chr16.601 Chr16 18691672 18700116 PREDICTED: Intraflagellar transport protein 20 homolog B nan K16473
gene-evm.TU.Chr16.605 rna-evm.model.Chr16.605 Chr16 18755271 18759374 uncharacterized protein nan K03673
gene-evm.TU.Chr16.606 rna-evm.model.Chr16.606 Chr16 18773422 18776389 PREDICTED: Serine/threonine-protein kinase TBK1 GO:0004672;GO:0005524;GO:0006468 K05410
gene-evm.TU.Chr16.608 rna-evm.model.Chr16.608 Chr16 18781036 18782753 PREDICTED: Putative methyltransferase DDB_G0268948 GO:0008168 K22438
gene-evm.TU.Chr16.61 rna-evm.model.Chr16.61 Chr16 1568308 1577954 PREDICTED: Zinc finger protein 782 GO:0003676 K09191
gene-evm.TU.Chr16.610 rna-evm.model.Chr16.610 Chr16 18787991 18799435 PREDICTED: Uncharacterized protein F58A4.6 nan nan
gene-evm.TU.Chr16.611 rna-evm.model.Chr16.611 Chr16 18820272 18930574 PREDICTED: RNA-binding protein Musashi homolog Rbp6 GO:0003676;GO:0003729;GO:0007281 K14411

For more detailed data, you can explore the Download section to access the full dataset.