CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.589 rna-evm.model.Chr16.589 Chr16 18352394 18357808 uncharacterized protein nan nan
gene-evm.TU.Chr16.59 rna-evm.model.Chr16.59 Chr16 1524399 1524949 PREDICTED: THAP domain-containing protein 11 nan K23222
gene-evm.TU.Chr16.590 rna-evm.model.Chr16.590 Chr16 18412842 18414457 PREDICTED: THAP domain-containing protein 11 GO:0003676 K23211
gene-evm.TU.Chr16.591 rna-evm.model.Chr16.591 Chr16 18414727 18415044 PREDICTED: THAP domain-containing protein 11 nan K08820
gene-evm.TU.Chr16.592 rna-evm.model.Chr16.592 Chr16 18417316 18421173 PREDICTED: inner nuclear membrane protein Man1 GO:0008270 K01143
gene-evm.TU.Chr16.593 rna-evm.model.Chr16.593 Chr16 18424461 18440087 PREDICTED: Sulfotransferase family cytosolic 1B member 1 GO:0008146 K01025
gene-evm.TU.Chr16.594 rna-evm.model.Chr16.594 Chr16 18459639 18491469 PREDICTED: Sulfotransferase 1C4 GO:0008146 K01025
gene-evm.TU.Chr16.596 rna-evm.model.Chr16.596 Chr16 18560470 18568909 PREDICTED: Monocarboxylate transporter 12 GO:0016020;GO:0055085 K08189
gene-evm.TU.Chr16.597 rna-evm.model.Chr16.597 Chr16 18643993 18644256 PREDICTED: Histone-lysine N-methyltransferase SETMAR nan K21406
gene-evm.TU.Chr16.598 rna-evm.model.Chr16.598 Chr16 18650796 18659373 uncharacterized protein nan K04312

For more detailed data, you can explore the Download section to access the full dataset.