CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.579 rna-evm.model.Chr16.579 Chr16 17952374 17960343 PREDICTED: Fructose-bisphosphate aldolase GO:0004332;GO:0006096 K01623
gene-evm.TU.Chr16.580 rna-evm.model.Chr16.580 Chr16 17967698 17971470 PREDICTED: Polypeptide N-acetylgalactosaminyltransferase 5 nan K00710
gene-evm.TU.Chr16.581 rna-evm.model.Chr16.581 Chr16 17973374 17977621 PREDICTED: Growth hormone secretagogue receptor type 1 GO:0004930;GO:0007186;GO:0016020 K08428
gene-evm.TU.Chr16.582 rna-evm.model.Chr16.582 Chr16 18003705 18006297 uncharacterized protein nan K11355
gene-evm.TU.Chr16.583 rna-evm.model.Chr16.583 Chr16 18012769 18066927 PREDICTED: P-selectin nan K06496
gene-evm.TU.Chr16.584 rna-evm.model.Chr16.584 Chr16 18110114 18112350 PREDICTED: Growth hormone secretagogue receptor type 1 GO:0004930;GO:0007186;GO:0016020 K08428
gene-evm.TU.Chr16.585 rna-evm.model.Chr16.585 Chr16 18196103 18196662 PREDICTED: growth hormone secretagogue receptor GO:0008528;GO:0016020 K26201
gene-evm.TU.Chr16.586 rna-evm.model.Chr16.586 Chr16 18234665 18236715 PREDICTED: Growth hormone secretagogue receptor type 1 GO:0004930;GO:0007186;GO:0016020 K08428
gene-evm.TU.Chr16.587 rna-evm.model.Chr16.587 Chr16 18265556 18265936 PREDICTED: Involucrin nan K05956
gene-evm.TU.Chr16.588 rna-evm.model.Chr16.588 Chr16 18267436 18314640 PREDICTED: Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 nan K24469

For more detailed data, you can explore the Download section to access the full dataset.