CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.2536 rna-evm.model.Chr1.2536 Chr1 79884228 79890337 PREDICTED: Copper transport protein ATOX1 GO:0030001;GO:0046872 K07213
gene-evm.TU.Chr1.2537 rna-evm.model.Chr1.2537 Chr1 79890757 79903623 PREDICTED: Acid ceramidase nan K12348
gene-evm.TU.Chr1.2538 rna-evm.model.Chr1.2538 Chr1 79907057 79909387 PREDICTED: sorting nexin-13 nan nan
gene-evm.TU.Chr1.2539 rna-evm.model.Chr1.2539 Chr1 79912786 79917974 PREDICTED: Acid ceramidase nan K12348
gene-evm.TU.Chr1.254 rna-evm.model.Chr1.254 Chr1 7405947 7459186 PREDICTED: THO complex subunit 2 GO:0000347;GO:0006397;GO:0006406 K12879
gene-evm.TU.Chr1.2540 rna-evm.model.Chr1.2540 Chr1 79918352 79931728 PREDICTED: Cyclic nucleotide-binding domain-containing protein 2 nan K19477
gene-evm.TU.Chr1.2541 rna-evm.model.Chr1.2541 Chr1 79951764 79954825 PREDICTED: Proline-rich transmembrane protein 1 GO:0016020 K23896
gene-evm.TU.Chr1.2543 rna-evm.model.Chr1.2543 Chr1 80006268 80096317 PREDICTED: Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1 GO:0005096;GO:0005515;GO:0007165 K18439
gene-evm.TU.Chr1.2544 rna-evm.model.Chr1.2544 Chr1 80111653 80115484 PREDICTED: Potassium channel subfamily K member 10 GO:0005267;GO:0016020;GO:0071805 K04913
gene-evm.TU.Chr1.2545 rna-evm.model.Chr1.2545 Chr1 80120505 80154731 PREDICTED: Chromosome-associated kinesin KIF4A GO:0003777;GO:0005524;GO:0007018;GO:0008017 K10395

For more detailed data, you can explore the Download section to access the full dataset.