CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.567 rna-evm.model.Chr16.567 Chr16 17473231 17474005 PREDICTED: dolichyl-phosphate beta-glucosyltransferase [EC:2.4.1.117] nan nan
gene-evm.TU.Chr16.569 rna-evm.model.Chr16.569 Chr16 17512641 17523188 PREDICTED: MAP kinase-activated protein kinase 5 GO:0004672;GO:0005524;GO:0006468 K04442
gene-evm.TU.Chr16.570 rna-evm.model.Chr16.570 Chr16 17525975 17537659 PREDICTED: Chromatin target of PRMT1 protein nan K18743
gene-evm.TU.Chr16.571 rna-evm.model.Chr16.571 Chr16 17537807 17544603 PREDICTED: Fructose-bisphosphate aldolase GO:0004332;GO:0006096 K01623
gene-evm.TU.Chr16.573 rna-evm.model.Chr16.573 Chr16 17557005 17560882 PREDICTED: E3 ubiquitin-protein ligase TRIM33 GO:0008270 K12026
gene-evm.TU.Chr16.574 rna-evm.model.Chr16.574 Chr16 17564674 17580964 PREDICTED: Complement C4 GO:0004866;GO:0005515;GO:0005576;GO:0005615 K03989
gene-evm.TU.Chr16.575 rna-evm.model.Chr16.575 Chr16 17583219 17651283 PREDICTED: Complement C5 GO:0004866;GO:0005576 K03989
gene-evm.TU.Chr16.576 rna-evm.model.Chr16.576 Chr16 17652011 17705799 PREDICTED: Complement C3 (Fragment) GO:0004866;GO:0005615 K03989
gene-evm.TU.Chr16.577 rna-evm.model.Chr16.577 Chr16 17709337 17727295 PREDICTED: Complement C5 GO:0004866 K03989
gene-evm.TU.Chr16.578 rna-evm.model.Chr16.578 Chr16 17821171 17943253 PREDICTED: C3 and PZP-like alpha-2-macroglobulin domain-containing protein 8 GO:0005576;GO:0005615 K03989

For more detailed data, you can explore the Download section to access the full dataset.