CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.540 rna-evm.model.Chr16.540 Chr16 16991510 17009828 PREDICTED: RING finger protein 10 GO:0046872 K26979
gene-evm.TU.Chr16.541 rna-evm.model.Chr16.541.2 Chr16 17019007 17039786 PREDICTED: Proline-serine-threonine phosphatase-interacting protein 1 nan K12804
gene-evm.TU.Chr16.542 rna-evm.model.Chr16.542 Chr16 17041774 17061908 PREDICTED: Collagen alpha-5(VI) chain GO:0005509 K06238
gene-evm.TU.Chr16.545 rna-evm.model.Chr16.545 Chr16 17089573 17089770 uncharacterized protein nan nan
gene-evm.TU.Chr16.546 rna-evm.model.Chr16.546 Chr16 17106194 17107279 PREDICTED: Cysteinyl leukotriene receptor 1 GO:0004930;GO:0007186;GO:0008528;GO:0016020 K08428
gene-evm.TU.Chr16.547 rna-evm.model.Chr16.547 Chr16 17109578 17114317 PREDICTED: biotinidase [EC:3.5.1.12] nan K08069
gene-evm.TU.Chr16.548 rna-evm.model.Chr16.548 Chr16 17123300 17145488 PREDICTED: squid nan nan
gene-evm.TU.Chr16.549 rna-evm.model.Chr16.549 Chr16 17147205 17158289 PREDICTED: biotinidase [EC:3.5.1.12] nan K08069
gene-evm.TU.Chr16.55 rna-evm.model.Chr16.55 Chr16 1488040 1496577 uncharacterized protein nan nan
gene-evm.TU.Chr16.550 rna-evm.model.Chr16.550 Chr16 17161685 17162736 PREDICTED: Protein unc-13 homolog C nan K24353

For more detailed data, you can explore the Download section to access the full dataset.