CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.526 rna-evm.model.Chr16.526 Chr16 16804870 16835041 PREDICTED: Synaptic vesicle 2-related protein GO:0016020;GO:0022857;GO:0055085 K08369
gene-evm.TU.Chr16.527 rna-evm.model.Chr16.527 Chr16 16847041 16855915 PREDICTED: Nicotinate-nucleotide pyrophosphorylase [carboxylating] (Fragment) GO:0004514;GO:0009435;GO:0016763 K00767
gene-evm.TU.Chr16.528 rna-evm.model.Chr16.528 Chr16 16860616 16879088 PREDICTED: Solute carrier family 13 member 3 GO:0005215;GO:0016020;GO:0055085 K14445
gene-evm.TU.Chr16.529 rna-evm.model.Chr16.529 Chr16 16886676 16892777 PREDICTED: UPF0545 protein C22orf39 homolog nan K19816
gene-evm.TU.Chr16.53 rna-evm.model.Chr16.53 Chr16 1439206 1451392 PREDICTED: RNA polymerase-associated protein LEO1 GO:0006368;GO:0016570;GO:0016593 K15177
gene-evm.TU.Chr16.530 rna-evm.model.Chr16.530 Chr16 16897059 16944054 PREDICTED: 2-oxoglutarate and iron-dependent oxygenase domain-containing protein 2 GO:0005506;GO:0016491;GO:0016705;GO:0031418;GO:0055114 K13646
gene-evm.TU.Chr16.533 rna-evm.model.Chr16.533 Chr16 16940057 16941124 PREDICTED: Repetitive proline-rich cell wall protein 2 nan K15353
gene-evm.TU.Chr16.536 rna-evm.model.Chr16.536 Chr16 16954244 16971090 uncharacterized protein nan K22972
gene-evm.TU.Chr16.537 rna-evm.model.Chr16.537 Chr16 16971224 16971657 uncharacterized protein nan nan
gene-evm.TU.Chr16.538 rna-evm.model.Chr16.538 Chr16 16979257 16986255 PREDICTED: transmembrane protein 17 nan K05745

For more detailed data, you can explore the Download section to access the full dataset.