CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.506 rna-evm.model.Chr16.506 Chr16 16072739 16073714 uncharacterized protein nan nan
gene-evm.TU.Chr16.507 rna-evm.model.Chr16.507 Chr16 16085077 16086718 PREDICTED: Alpha-protein kinase vwkA nan K24511
gene-evm.TU.Chr16.508 rna-evm.model.Chr16.508 Chr16 16094108 16101784 PREDICTED: Mitochondrial import inner membrane translocase subunit Tim22 GO:0042721;GO:0045039 K17790
gene-evm.TU.Chr16.509 rna-evm.model.Chr16.509 Chr16 16111079 16217814 PREDICTED: Complement C3 (Fragment) GO:0004866;GO:0005576;GO:0005615 K03989
gene-evm.TU.Chr16.51 rna-evm.model.Chr16.51 Chr16 1434109 1435928 PREDICTED: cap1 methyltransferase [EC:2.1.1.57] nan K16777
gene-evm.TU.Chr16.510 rna-evm.model.Chr16.510 Chr16 16241973 16243528 uncharacterized protein nan K17527
gene-evm.TU.Chr16.511 rna-evm.model.Chr16.511 Chr16 16265990 16398495 PREDICTED: A.superbus venom factor 1 GO:0004866;GO:0005515;GO:0005576;GO:0005615 K03990
gene-evm.TU.Chr16.512 rna-evm.model.Chr16.512 Chr16 16445318 16506267 PREDICTED: Complement C3 (Fragment) GO:0004866;GO:0005515;GO:0005576;GO:0005615 K03989
gene-evm.TU.Chr16.513 rna-evm.model.Chr16.513 Chr16 16574126 16602674 PREDICTED: Potassium voltage-gated channel protein egl-36 GO:0005216;GO:0005249;GO:0006811;GO:0006813;GO:0008076;GO:0016020;GO:0051260;GO:0055085 K04887
gene-evm.TU.Chr16.514 rna-evm.model.Chr16.514 Chr16 16608008 16609189 uncharacterized protein nan K12351

For more detailed data, you can explore the Download section to access the full dataset.