CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.481 rna-evm.model.Chr16.481 Chr16 14555743 14556482 PREDICTED: trichohyalin-like nan K09291
gene-evm.TU.Chr16.482 rna-evm.model.Chr16.482 Chr16 14563349 14564082 PREDICTED: viral A-type inclusion protein nan K12575
gene-evm.TU.Chr16.483 rna-evm.model.Chr16.483 Chr16 14566967 14571431 PREDICTED: copper amine oxidase nan K12575
gene-evm.TU.Chr16.484 rna-evm.model.Chr16.484 Chr16 14574971 14591770 PREDICTED: General transcription factor IIH subunit 3 GO:0000439;GO:0006289;GO:0006355 K03143
gene-evm.TU.Chr16.485 rna-evm.model.Chr16.485 Chr16 14595972 14609539 PREDICTED: 4-hydroxyphenylpyruvate dioxygenase GO:0003868;GO:0009072;GO:0016701;GO:0055114 K00457
gene-evm.TU.Chr16.486 rna-evm.model.Chr16.486 Chr16 14614269 14617517 uncharacterized protein nan nan
gene-evm.TU.Chr16.487 rna-evm.model.Chr16.487 Chr16 14626411 14629990 PREDICTED: MORN repeat-containing protein 3 nan K25458
gene-evm.TU.Chr16.488 rna-evm.model.Chr16.488 Chr16 14634467 14657369 PREDICTED: Coiled-coil domain-containing protein 189 nan K25547
gene-evm.TU.Chr16.489 rna-evm.model.Chr16.489 Chr16 14660155 14666744 PREDICTED: DNA repair protein RAD51 homolog 3 GO:0003677;GO:0005524;GO:0006281;GO:0008094 K10870
gene-evm.TU.Chr16.49 rna-evm.model.Chr16.49 Chr16 1383815 1426472 PREDICTED: Paxillin nan K05760

For more detailed data, you can explore the Download section to access the full dataset.