CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.490 rna-evm.model.Chr16.490 Chr16 14666842 14680127 PREDICTED: Protein phosphatase 1F GO:0003824;GO:0004722;GO:0006470 K17501
gene-evm.TU.Chr16.493 rna-evm.model.Chr16.493 Chr16 14996575 15003956 PREDICTED: protein kinase D [EC:2.7.11.13] nan K06872
gene-evm.TU.Chr16.494 rna-evm.model.Chr16.494 Chr16 15056004 15056672 PREDICTED: filamin nan K12575
gene-evm.TU.Chr16.495 rna-evm.model.Chr16.495 Chr16 15071819 15072766 PREDICTED: exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-] nan K16308
gene-evm.TU.Chr16.498 rna-evm.model.Chr16.498 Chr16 15594567 15625083 uncharacterized protein nan nan
gene-evm.TU.Chr16.499 rna-evm.model.Chr16.499 Chr16 15690945 15698365 uncharacterized protein nan K06846
gene-evm.TU.Chr16.50 rna-evm.model.Chr16.50 Chr16 1433377 1433973 PREDICTED: relaxin family peptide receptor 1 nan K23449
gene-evm.TU.Chr16.502 rna-evm.model.Chr16.502 Chr16 15975906 15977137 PREDICTED: Putative ankyrin repeat protein FPV162 GO:0005515 K20032
gene-evm.TU.Chr16.504 rna-evm.model.Chr16.504 Chr16 16032375 16068188 PREDICTED: Ankyrin-3 GO:0005515 K02580
gene-evm.TU.Chr16.505 rna-evm.model.Chr16.505 Chr16 16072252 16072701 PREDICTED: Alpha-protein kinase vwkA nan K24511

For more detailed data, you can explore the Download section to access the full dataset.