CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.441 rna-evm.model.Chr16.441 Chr16 13458864 13468522 PREDICTED: Organic cation transporter-like protein GO:0016020;GO:0022857;GO:0055085 K08202
gene-evm.TU.Chr16.443 rna-evm.model.Chr16.443 Chr16 13477842 13501522 PREDICTED: Splicing factor, suppressor of white-apricot homolog GO:0003723;GO:0006396 K12825
gene-evm.TU.Chr16.445 rna-evm.model.Chr16.445 Chr16 13505415 13508462 uncharacterized protein nan nan
gene-evm.TU.Chr16.446 rna-evm.model.Chr16.446 Chr16 13518902 13532872 PREDICTED: Putative transmembrane protein ORF68 nan nan
gene-evm.TU.Chr16.447 rna-evm.model.Chr16.447 Chr16 13534553 13538542 uncharacterized protein nan K21947
gene-evm.TU.Chr16.448 rna-evm.model.Chr16.448 Chr16 13526907 13564251 PREDICTED: ABC transporter B family member 1 GO:0005524;GO:0016020;GO:0016887;GO:0042626;GO:0055085 K05657
gene-evm.TU.Chr16.449 rna-evm.model.Chr16.449 Chr16 13595323 13605040 PREDICTED: Polyamine-modulated factor 1 GO:0000444 K11546
gene-evm.TU.Chr16.45 rna-evm.model.Chr16.45 Chr16 1271916 1293990 PREDICTED: CD2 antigen cytoplasmic tail-binding protein 2 GO:0005515;GO:0005682 K13099
gene-evm.TU.Chr16.450 rna-evm.model.Chr16.450 Chr16 13640160 13643565 uncharacterized protein nan nan
gene-evm.TU.Chr16.452 rna-evm.model.Chr16.452 Chr16 13711072 13713227 PREDICTED: Potassium channel subfamily K member 9 GO:0005267;GO:0016020;GO:0071805 K05323

For more detailed data, you can explore the Download section to access the full dataset.