CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.453 rna-evm.model.Chr16.453 Chr16 13734086 13735731 PREDICTED: Potassium channel subfamily K member 9 nan K05323
gene-evm.TU.Chr16.454 rna-evm.model.Chr16.454 Chr16 13752103 13809149 PREDICTED: TWiK family of potassium channels protein 18 GO:0005267;GO:0016020;GO:0071805 K05323
gene-evm.TU.Chr16.455 rna-evm.model.Chr16.455 Chr16 13812397 13818535 PREDICTED: Telomerase Cajal body protein 1 GO:0005515 K23314
gene-evm.TU.Chr16.456 rna-evm.model.Chr16.456 Chr16 13828931 13830157 PREDICTED: Pogo transposable element with KRAB domain GO:0003676 K01152
gene-evm.TU.Chr16.457 rna-evm.model.Chr16.457 Chr16 13830159 13830823 PREDICTED: solute carrier family 23 (nucleobase transporter), member 1/2 GO:0003677 K20015
gene-evm.TU.Chr16.458 rna-evm.model.Chr16.458.1 Chr16 13873672 13890220 PREDICTED: Ankyrin-1 GO:0005515 K15503
gene-evm.TU.Chr16.459 rna-evm.model.Chr16.459 Chr16 13949154 13962676 PREDICTED: Carboxypeptidase D (Fragment) GO:0004181;GO:0004185;GO:0006508;GO:0008270 K07752
gene-evm.TU.Chr16.46 rna-evm.model.Chr16.46 Chr16 1294689 1297550 uncharacterized protein nan K04220
gene-evm.TU.Chr16.462 rna-evm.model.Chr16.462 Chr16 14143208 14179601 PREDICTED: Zinc transporter ZIP10 GO:0016020;GO:0030001;GO:0046873;GO:0055085 K14716
gene-evm.TU.Chr16.465 rna-evm.model.Chr16.465 Chr16 14248951 14252985 PREDICTED: Putative nuclease HARBI1 nan K23222

For more detailed data, you can explore the Download section to access the full dataset.