CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.2526 rna-evm.model.Chr1.2526 Chr1 79269761 79275995 PREDICTED: Cholecystokinin receptor GO:0004930;GO:0007186;GO:0016020 K04194
gene-evm.TU.Chr1.2527 rna-evm.model.Chr1.2527 Chr1 79431936 79432283 PREDICTED: histone-lysine N-methyltransferase SETMAR [EC:2.1.1.43] nan nan
gene-evm.TU.Chr1.2528 rna-evm.model.Chr1.2528 Chr1 79461780 79463640 PREDICTED: Histone-lysine N-methyltransferase SETMAR nan K11433
gene-evm.TU.Chr1.2529 rna-evm.model.Chr1.2529 Chr1 79654993 79661601 PREDICTED: Transmembrane protein 144 GO:0015144;GO:0016020;GO:0034219 K05340
gene-evm.TU.Chr1.253 rna-evm.model.Chr1.253 Chr1 7385915 7400747 PREDICTED: Alkylated DNA repair protein alkB homolog 8 GO:0002098;GO:0003676;GO:0008168;GO:0016300;GO:0016491;GO:0030488;GO:0055114 K10770
gene-evm.TU.Chr1.2530 rna-evm.model.Chr1.2530 Chr1 79673964 79717774 PREDICTED: IQ domain-containing protein M GO:0005515 K16743
gene-evm.TU.Chr1.2531 rna-evm.model.Chr1.2531 Chr1 79719976 79758878 PREDICTED: structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12) nan nan
gene-evm.TU.Chr1.2532 rna-evm.model.Chr1.2532 Chr1 79764683 79824078 PREDICTED: Protein dachsous GO:0005509;GO:0007156;GO:0016020 K16507
gene-evm.TU.Chr1.2533_evm.TU.Chr1.2535 rna-evm.model.Chr1.2533_evm.model.Chr1.2535 Chr1 79831396 79867340 PREDICTED: PDZ domain-containing protein 8 GO:0005515;GO:0008289;GO:0035556;GO:0044233;GO:0051560;GO:1990456 K24060
gene-evm.TU.Chr1.2534 rna-evm.model.Chr1.2534 Chr1 79860429 79861022 PREDICTED: Tigger transposable element derived 5 GO:0003677 K11496

For more detailed data, you can explore the Download section to access the full dataset.