CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.43 rna-evm.model.Chr16.43 Chr16 1242954 1243331 PREDICTED: Exodeoxyribonuclease III nan K22901
gene-evm.TU.Chr16.430 rna-evm.model.Chr16.430 Chr16 13228667 13239148 PREDICTED: Ficolin-1 nan K10104
gene-evm.TU.Chr16.432 rna-evm.model.Chr16.432 Chr16 13266459 13268879 PREDICTED: Fibrinogen C domain-containing protein 1 nan K25409
gene-evm.TU.Chr16.434 rna-evm.model.Chr16.434 Chr16 13296660 13298521 PREDICTED: LYR motif-containing protein 9 nan K18167
gene-evm.TU.Chr16.435 rna-evm.model.Chr16.435 Chr16 13298510 13310830 PREDICTED: Putative L-aspartate dehydrogenase GO:0006742;GO:0016491;GO:0019363;GO:0050661;GO:0055114 K06989
gene-evm.TU.Chr16.436 rna-evm.model.Chr16.436 Chr16 13312604 13331793 PREDICTED: Protein PIF GO:0005576;GO:0006030;GO:0008061 K06238
gene-evm.TU.Chr16.437_evm.TU.Chr16.439 rna-evm.model.Chr16.437_evm.model.Chr16.439 Chr16 13335576 13374720 PREDICTED: Serine dehydratase-like nan K17989
gene-evm.TU.Chr16.438 rna-evm.model.Chr16.438 Chr16 13351259 13359014 PREDICTED: Non-structural maintenance of chromosomes element 3 homolog nan K22823
gene-evm.TU.Chr16.44 rna-evm.model.Chr16.44 Chr16 1259965 1269303 PREDICTED: Transmembrane protein 17B nan K19384
gene-evm.TU.Chr16.440 rna-evm.model.Chr16.440 Chr16 13402619 13410752 PREDICTED: Serine dehydratase-like nan K17989

For more detailed data, you can explore the Download section to access the full dataset.