CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.413 rna-evm.model.Chr16.413 Chr16 12927709 12929631 PREDICTED: fibrillin 1 nan K15047
gene-evm.TU.Chr16.414 rna-evm.model.Chr16.414 Chr16 12935585 12946450 PREDICTED: Dopamine beta-hydroxylase GO:0004497;GO:0005507;GO:0016715;GO:0055114 K00503
gene-evm.TU.Chr16.415 rna-evm.model.Chr16.415 Chr16 12950733 12960951 PREDICTED: Glyoxalase domain-containing protein 4 nan K01759
gene-evm.TU.Chr16.416 rna-evm.model.Chr16.416.4 Chr16 12967003 13040685 PREDICTED: Serine/arginine repetitive matrix protein 2 nan K13172
gene-evm.TU.Chr16.417 rna-evm.model.Chr16.417 Chr16 13044995 13062414 PREDICTED: Glutathione hydrolase 1 proenzyme GO:0006751;GO:0036374 K18592
gene-evm.TU.Chr16.418 rna-evm.model.Chr16.418 Chr16 13071143 13072851 PREDICTED: BTB/POZ domain-containing protein KCTD7 GO:0051260 K21917
gene-evm.TU.Chr16.421 rna-evm.model.Chr16.421 Chr16 13079702 13080472 PREDICTED: Protein ALP1-like nan K23222
gene-evm.TU.Chr16.427 rna-evm.model.Chr16.427 Chr16 13182547 13185483 uncharacterized protein GO:0016020 K24190
gene-evm.TU.Chr16.428 rna-evm.model.Chr16.428 Chr16 13207195 13212611 uncharacterized protein nan K19289
gene-evm.TU.Chr16.429 rna-evm.model.Chr16.429 Chr16 13219918 13221303 PREDICTED: Ficolin-1 nan K10104

For more detailed data, you can explore the Download section to access the full dataset.