CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.4 rna-evm.model.Chr16.4 Chr16 139124 141358 PREDICTED: Homeobox protein cut-like 1 nan K07164
gene-evm.TU.Chr16.40 rna-evm.model.Chr16.40 Chr16 1201776 1202072 PREDICTED: RNA-directed DNA polymerase from mobile element jockey-like nan K02872
gene-evm.TU.Chr16.404 rna-evm.model.Chr16.404 Chr16 12740136 12740716 PREDICTED: Putative nuclease HARBI1 nan K23222
gene-evm.TU.Chr16.405 rna-evm.model.Chr16.405 Chr16 12743544 12752789 PREDICTED: nuclease HARBI1 [EC:3.1.-.-] nan K23222
gene-evm.TU.Chr16.407 rna-evm.model.Chr16.407 Chr16 12779565 12780824 uncharacterized protein nan nan
gene-evm.TU.Chr16.408 rna-evm.model.Chr16.408 Chr16 12783016 12784927 PREDICTED: Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase GO:0008375;GO:0016020 K00727
gene-evm.TU.Chr16.409 rna-evm.model.Chr16.409 Chr16 12795472 12910258 PREDICTED: Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase GO:0008375;GO:0016020 K00727
gene-evm.TU.Chr16.41_evm.TU.Chr16.42 rna-evm.model.Chr16.41_evm.model.Chr16.42 Chr16 1209743 1231555 PREDICTED: C-type lectin domain family 4 member F nan K21764
gene-evm.TU.Chr16.411 rna-evm.model.Chr16.411 Chr16 12913952 12922705 uncharacterized protein nan nan
gene-evm.TU.Chr16.412 rna-evm.model.Chr16.412 Chr16 12923761 12925071 PREDICTED: tocopherol cyclase [EC:5.5.1.24] GO:0009976 K09834

For more detailed data, you can explore the Download section to access the full dataset.