CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.367 rna-evm.model.Chr16.367 Chr16 11532215 11564237 PREDICTED: Oxysterol-binding protein 1 nan K20462
gene-evm.TU.Chr16.371 rna-evm.model.Chr16.371 Chr16 11656143 11687022 PREDICTED: E3 ubiquitin-protein ligase CHFR GO:0005515 K10644
gene-evm.TU.Chr16.374 rna-evm.model.Chr16.374 Chr16 11812930 11820884 uncharacterized protein nan K27065
gene-evm.TU.Chr16.375 rna-evm.model.Chr16.375 Chr16 11821867 11822586 PREDICTED: reverse transcriptase family protein, partial nan nan
gene-evm.TU.Chr16.376 rna-evm.model.Chr16.376 Chr16 11845276 11849541 PREDICTED: pre-mRNA-splicing factor CWC22 nan nan
gene-evm.TU.Chr16.377 rna-evm.model.Chr16.377 Chr16 11899480 11899932 PREDICTED: aminopeptidase N [EC:3.4.11.2] nan K20012
gene-evm.TU.Chr16.381 rna-evm.model.Chr16.381 Chr16 11976824 11977459 PREDICTED: solute carrier family 23 (nucleobase transporter), member 1/2 GO:0003677 K20015
gene-evm.TU.Chr16.382 rna-evm.model.Chr16.382 Chr16 12040466 12055347 PREDICTED: chemokine-like receptor 1 GO:0004930;GO:0007186;GO:0016020 K04218
gene-evm.TU.Chr16.383 rna-evm.model.Chr16.383 Chr16 12128431 12130005 PREDICTED: Uncharacterized protein KIAA1958 homolog nan K24675
gene-evm.TU.Chr16.384 rna-evm.model.Chr16.384 Chr16 12275162 12276748 uncharacterized protein nan K06872

For more detailed data, you can explore the Download section to access the full dataset.