CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.323 rna-evm.model.Chr16.323 Chr16 10916400 10929497 PREDICTED: Carbonic anhydrase 7 GO:0004089;GO:0005886;GO:0008270;GO:0031225 K01672
gene-evm.TU.Chr16.325 rna-evm.model.Chr16.325 Chr16 10965385 10973707 PREDICTED: Small integral membrane protein 14 nan nan
gene-evm.TU.Chr16.329 rna-evm.model.Chr16.329 Chr16 11053966 11077417 PREDICTED: mucin-21-like, partial nan K11244
gene-evm.TU.Chr16.33 rna-evm.model.Chr16.33 Chr16 947078 1016190 PREDICTED: E1A-binding protein p400 GO:0005524 K11661
gene-evm.TU.Chr16.336 rna-evm.model.Chr16.336 Chr16 11112567 11113259 PREDICTED: Apoptosis inhibitor IAP nan K16060
gene-evm.TU.Chr16.340 rna-evm.model.Chr16.340 Chr16 11119656 11120078 PREDICTED: tripartite motif-containing protein 2/3 nan K26041
gene-evm.TU.Chr16.349 rna-evm.model.Chr16.349 Chr16 11152780 11156910 PREDICTED: Transmembrane protein 151B nan K04465
gene-evm.TU.Chr16.35 rna-evm.model.Chr16.35 Chr16 1065104 1082557 PREDICTED: Kinesin-like protein KIF15 nan K10642
gene-evm.TU.Chr16.351 rna-evm.model.Chr16.351 Chr16 11161622 11163542 PREDICTED: Small nuclear ribonucleoprotein Sm D3 GO:0006396 K11088
gene-evm.TU.Chr16.352 rna-evm.model.Chr16.352 Chr16 11163613 11176329 PREDICTED: Replication factor C subunit 2 GO:0005524 K10755

For more detailed data, you can explore the Download section to access the full dataset.