CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.310 rna-evm.model.Chr16.310 Chr16 10254812 10255402 PREDICTED: Integrase/recombinase xerD homolog nan K04763
gene-evm.TU.Chr16.311 rna-evm.model.Chr16.311 Chr16 10183433 10261776 uncharacterized protein nan K06449
gene-evm.TU.Chr16.313 rna-evm.model.Chr16.313 Chr16 10316087 10317007 PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:3.6.4.-] nan K00986
gene-evm.TU.Chr16.315 rna-evm.model.Chr16.315 Chr16 10363592 10363933 PREDICTED: tudor domain-containing protein 1/4/6/7 nan K27021
gene-evm.TU.Chr16.316 rna-evm.model.Chr16.316 Chr16 10364094 10367270 PREDICTED: NLR family CARD domain-containing protein 3 nan K03324
gene-evm.TU.Chr16.318 rna-evm.model.Chr16.318 Chr16 10401355 10404727 PREDICTED: 1-deoxyxylulose-5-phosphate synthase YajO nan K23107
gene-evm.TU.Chr16.319 rna-evm.model.Chr16.319 Chr16 10478193 10502213 PREDICTED: LHFPL tetraspan subfamily member 2 protein nan K23893
gene-evm.TU.Chr16.32 rna-evm.model.Chr16.32 Chr16 932704 941568 uncharacterized protein nan K15261
gene-evm.TU.Chr16.321 rna-evm.model.Chr16.321 Chr16 10618234 10620624 PREDICTED: LHFPL tetraspan subfamily member 2a protein nan K23893
gene-evm.TU.Chr16.322 rna-evm.model.Chr16.322 Chr16 10819135 10885920 PREDICTED: Eukaryotic translation initiation factor 3 subunit C GO:0003723;GO:0003743;GO:0005852;GO:0006413;GO:0031369 K03252

For more detailed data, you can explore the Download section to access the full dataset.