CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.285 rna-evm.model.Chr16.285 Chr16 9614245 9645790 PREDICTED: Guanylate-binding protein 1 GO:0003924;GO:0005525 K20899
gene-evm.TU.Chr16.286 rna-evm.model.Chr16.286 Chr16 9661160 9662006 PREDICTED: exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-] nan K22076
gene-evm.TU.Chr16.287 rna-evm.model.Chr16.287 Chr16 9664782 9669652 PREDICTED: myotubularin-related protein 10/11/12 nan K12636
gene-evm.TU.Chr16.288 rna-evm.model.Chr16.288 Chr16 9670171 9671449 uncharacterized protein nan K11341
gene-evm.TU.Chr16.29 rna-evm.model.Chr16.29 Chr16 866453 866659 PREDICTED: solute carrier family 5 (sodium-dependent multivitamin transporter), member 6 nan nan
gene-evm.TU.Chr16.293 rna-evm.model.Chr16.293 Chr16 9799663 9800121 uncharacterized protein nan nan
gene-evm.TU.Chr16.294 rna-evm.model.Chr16.294 Chr16 9802111 9816170 PREDICTED: Protein sidekick-1 GO:0005515 K06761
gene-evm.TU.Chr16.295 rna-evm.model.Chr16.295 Chr16 9817915 9819317 uncharacterized protein nan K05060
gene-evm.TU.Chr16.299 rna-evm.model.Chr16.299 Chr16 10000074 10031261 PREDICTED: Ubiquitin-protein ligase E3B GO:0004842;GO:0005515 K10588
gene-evm.TU.Chr16.3 rna-evm.model.Chr16.3 Chr16 104931 105581 PREDICTED: glucuronosyltransferase [EC:2.4.1.17] GO:0003677;GO:0006310;GO:0015074 K04763

For more detailed data, you can explore the Download section to access the full dataset.