CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.300 rna-evm.model.Chr16.300 Chr16 10040493 10088460 PREDICTED: Sodium/glucose cotransporter 4 GO:0016020;GO:0022857;GO:0055085 K14391
gene-evm.TU.Chr16.301 rna-evm.model.Chr16.301 Chr16 10090895 10099066 PREDICTED: proline-rich receptor-like protein kinase PERK1 nan K13429
gene-evm.TU.Chr16.303 rna-evm.model.Chr16.303 Chr16 10113916 10125587 PREDICTED: Arylsulfatase J GO:0008484 K12375
gene-evm.TU.Chr16.304 rna-evm.model.Chr16.304 Chr16 10129043 10156479 uncharacterized protein nan K19904
gene-evm.TU.Chr16.305 rna-evm.model.Chr16.305 Chr16 10164100 10165830 uncharacterized protein nan K06449
gene-evm.TU.Chr16.306 rna-evm.model.Chr16.306 Chr16 10166690 10243409 uncharacterized protein nan K06449
gene-evm.TU.Chr16.307 rna-evm.model.Chr16.307 Chr16 10246270 10251187 uncharacterized protein nan K06449
gene-evm.TU.Chr16.308 rna-evm.model.Chr16.308 Chr16 10251246 10253375 PREDICTED: Transposon Tf2-6 polyprotein nan K06245
gene-evm.TU.Chr16.309 rna-evm.model.Chr16.309 Chr16 10254383 10254766 uncharacterized protein nan nan
gene-evm.TU.Chr16.31 rna-evm.model.Chr16.31 Chr16 920309 926528 uncharacterized protein nan nan

For more detailed data, you can explore the Download section to access the full dataset.