CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.2508 rna-evm.model.Chr1.2508 Chr1 78509081 78536917 PREDICTED: Collagen alpha-1(XII) chain nan K06238
gene-evm.TU.Chr1.2509 rna-evm.model.Chr1.2509 Chr1 78541367 78566889 PREDICTED: Pancreas/duodenum homeobox protein 1 GO:0003677 K07594
gene-evm.TU.Chr1.2510 rna-evm.model.Chr1.2510 Chr1 78622206 78624675 PREDICTED: GS homeobox 1 GO:0003677 K09310
gene-evm.TU.Chr1.2511 rna-evm.model.Chr1.2511 Chr1 78642320 78661486 PREDICTED: Monocarboxylate transporter 14 GO:0016020;GO:0055085 K08190
gene-evm.TU.Chr1.2512 rna-evm.model.Chr1.2512 Chr1 78668316 78671691 PREDICTED: THAP domain-containing protein 7 GO:0003676 K23204
gene-evm.TU.Chr1.2516 rna-evm.model.Chr1.2516 Chr1 78770040 78783314 PREDICTED: Monocarboxylate transporter 1 GO:0016020;GO:0055085 K08179
gene-evm.TU.Chr1.2519 rna-evm.model.Chr1.2519 Chr1 78925329 78932605 PREDICTED: THAP domain-containing protein 2 GO:0003676 K23204
gene-evm.TU.Chr1.252 rna-evm.model.Chr1.252 Chr1 7376725 7379833 PREDICTED: Zinc finger protein 595 GO:0003676 K22402
gene-evm.TU.Chr1.2523 rna-evm.model.Chr1.2523 Chr1 79182082 79182807 PREDICTED: solute carrier family 23 (nucleobase transporter), member 1/2 nan nan
gene-evm.TU.Chr1.2525 rna-evm.model.Chr1.2525 Chr1 79223711 79224386 uncharacterized protein nan K13762

For more detailed data, you can explore the Download section to access the full dataset.