CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.26 rna-evm.model.Chr16.26 Chr16 732934 735936 uncharacterized protein nan nan
gene-evm.TU.Chr16.260 rna-evm.model.Chr16.260 Chr16 8796213 8798338 PREDICTED: Tctex1 domain-containing protein 1 nan K25421
gene-evm.TU.Chr16.262 rna-evm.model.Chr16.262 Chr16 8814018 8828081 PREDICTED: Conditioned medium factor receptor 1 GO:0071949 K21401
gene-evm.TU.Chr16.264 rna-evm.model.Chr16.264.1 Chr16 8875973 8899920 PREDICTED: Putative zinc metalloproteinase C607.06c nan nan
gene-evm.TU.Chr16.265 rna-evm.model.Chr16.265 Chr16 8900089 8901152 PREDICTED: Autotransporter adhesin BpaC nan K19450
gene-evm.TU.Chr16.266 rna-evm.model.Chr16.266 Chr16 8914183 8923430 PREDICTED: Thioredoxin-related transmembrane protein 2 homolog GO:0045454 K25112
gene-evm.TU.Chr16.267 rna-evm.model.Chr16.267 Chr16 8947097 9008336 PREDICTED: Twitchin GO:0005515 K12567
gene-evm.TU.Chr16.268 rna-evm.model.Chr16.268 Chr16 9008743 9024035 PREDICTED: U-box domain-containing protein 34 GO:0004672;GO:0005524;GO:0006468 K04733
gene-evm.TU.Chr16.269 rna-evm.model.Chr16.269 Chr16 9044031 9044966 PREDICTED: exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-] nan K16732
gene-evm.TU.Chr16.27 rna-evm.model.Chr16.27 Chr16 741715 742511 uncharacterized protein nan nan

For more detailed data, you can explore the Download section to access the full dataset.