CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.270 rna-evm.model.Chr16.270 Chr16 9045928 9048949 uncharacterized protein nan K02084
gene-evm.TU.Chr16.271 rna-evm.model.Chr16.271 Chr16 9049193 9049933 uncharacterized protein nan nan
gene-evm.TU.Chr16.272 rna-evm.model.Chr16.272 Chr16 9050661 9056471 uncharacterized protein nan K15607
gene-evm.TU.Chr16.273 rna-evm.model.Chr16.273 Chr16 9075480 9088479 uncharacterized protein nan K22804
gene-evm.TU.Chr16.274 rna-evm.model.Chr16.274 Chr16 9166887 9168464 PREDICTED: WD repeat-containing protein 22 nan K01152
gene-evm.TU.Chr16.275 rna-evm.model.Chr16.275 Chr16 9180111 9208009 PREDICTED: ATP-dependent RNA helicase DDX24/MAK5 [EC:3.6.4.13] nan K04528
gene-evm.TU.Chr16.277 rna-evm.model.Chr16.277 Chr16 9315093 9340482 uncharacterized protein nan K26889
gene-evm.TU.Chr16.278 rna-evm.model.Chr16.278 Chr16 9391340 9395880 PREDICTED: Hemicentin-1 nan K08617
gene-evm.TU.Chr16.279 rna-evm.model.Chr16.279 Chr16 9414225 9429343 PREDICTED: Guanylate-binding protein 2 GO:0003924;GO:0005525 K20899
gene-evm.TU.Chr16.28 rna-evm.model.Chr16.28 Chr16 845364 853588 uncharacterized protein nan K08410

For more detailed data, you can explore the Download section to access the full dataset.