CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.243 rna-evm.model.Chr16.243 Chr16 7906467 7917183 PREDICTED: 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial GO:0008168 K06127
gene-evm.TU.Chr16.245 rna-evm.model.Chr16.245 Chr16 7993067 8112619 PREDICTED: Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase GO:0000829 K13024
gene-evm.TU.Chr16.246 rna-evm.model.Chr16.246 Chr16 8115528 8115917 PREDICTED: F-box and WD-40 domain protein 5 nan K25982
gene-evm.TU.Chr16.247 rna-evm.model.Chr16.247 Chr16 8117941 8143773 PREDICTED: 17-beta-hydroxysteroid dehydrogenase 14 nan K18009
gene-evm.TU.Chr16.251 rna-evm.model.Chr16.251 Chr16 8176770 8178937 PREDICTED: solute carrier family 15, member 5 GO:0015074 K03711
gene-evm.TU.Chr16.255 rna-evm.model.Chr16.255 Chr16 8228426 8229259 PREDICTED: Snaclec 3 nan K25727
gene-evm.TU.Chr16.256 rna-evm.model.Chr16.256 Chr16 8409422 8411422 PREDICTED: Protein PML nan K10054
gene-evm.TU.Chr16.257 rna-evm.model.Chr16.257 Chr16 8668016 8668483 PREDICTED: Protein GVQW3 nan K11433
gene-evm.TU.Chr16.258 rna-evm.model.Chr16.258 Chr16 8702814 8706526 PREDICTED: TWiK family of potassium channels protein 9 GO:0005267;GO:0016020;GO:0071805 K05323
gene-evm.TU.Chr16.259 rna-evm.model.Chr16.259 Chr16 8776864 8794311 PREDICTED: Potassium voltage-gated channel protein Shaw GO:0005216;GO:0005249;GO:0005515;GO:0006811;GO:0006813;GO:0008076;GO:0016020;GO:0051260;GO:0055085 K04887

For more detailed data, you can explore the Download section to access the full dataset.