CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.2168 rna-evm.model.Chr16.2168 Chr16 64596937 64604678 PREDICTED: Uncharacterized transporter slc-17.2 GO:0016020;GO:0055085 K08193
gene-evm.TU.Chr16.217 rna-evm.model.Chr16.217 Chr16 6980693 6987403 PREDICTED: Complement component 1 Q subcomponent-binding protein, mitochondrial GO:0005759 K15414
gene-evm.TU.Chr16.2170 rna-evm.model.Chr16.2170 Chr16 64613786 64615493 uncharacterized protein nan nan
gene-evm.TU.Chr16.2171 rna-evm.model.Chr16.2171 Chr16 64615574 64616206 PREDICTED: solute carrier family 15, member 5 nan K07497
gene-evm.TU.Chr16.2172 rna-evm.model.Chr16.2172 Chr16 64641695 64651554 PREDICTED: Sialin GO:0016020;GO:0055085 K12301
gene-evm.TU.Chr16.2173 rna-evm.model.Chr16.2173 Chr16 64655033 64661691 PREDICTED: Uncharacterized transporter slc-17.2 GO:0016020;GO:0055085 K12301
gene-evm.TU.Chr16.2174 rna-evm.model.Chr16.2174 Chr16 64663018 64669353 PREDICTED: INO80 complex subunit B GO:0006338;GO:0031011 K11666
gene-evm.TU.Chr16.218 rna-evm.model.Chr16.218 Chr16 6993397 7040884 PREDICTED: DNA excision repair protein ERCC-6-like GO:0005524 K20093
gene-evm.TU.Chr16.22 rna-evm.model.Chr16.22 Chr16 644309 649702 uncharacterized protein nan K21063
gene-evm.TU.Chr16.221 rna-evm.model.Chr16.221 Chr16 7064787 7070284 PREDICTED: BTB/POZ domain-containing protein 6 GO:0005515 K10478

For more detailed data, you can explore the Download section to access the full dataset.