CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.2157 rna-evm.model.Chr16.2157 Chr16 64392102 64398646 PREDICTED: Elongin-B GO:0005515;GO:0006368;GO:0030891;GO:0070449 K03873
gene-evm.TU.Chr16.2158 rna-evm.model.Chr16.2158 Chr16 64407795 64417014 PREDICTED: NFATC2-interacting protein nan K12160
gene-evm.TU.Chr16.2159 rna-evm.model.Chr16.2159 Chr16 64453158 64485107 PREDICTED: Serine/threonine-protein kinase NLK GO:0004672;GO:0005524;GO:0006468 K04468
gene-evm.TU.Chr16.216 rna-evm.model.Chr16.216 Chr16 6969079 6973548 PREDICTED: Serine/arginine-rich splicing factor 1 GO:0003676 K12890
gene-evm.TU.Chr16.2160 rna-evm.model.Chr16.2160 Chr16 64494418 64527385 PREDICTED: Serine/threonine-protein kinase TAO1 GO:0004672;GO:0005524;GO:0006468 K04429
gene-evm.TU.Chr16.2161 rna-evm.model.Chr16.2161 Chr16 64531613 64538771 PREDICTED: INO80 complex subunit B GO:0006338;GO:0031011 K11666
gene-evm.TU.Chr16.2163 rna-evm.model.Chr16.2163 Chr16 64553274 64554536 PREDICTED: MFS transporter, ACS family, solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 5 nan K12301
gene-evm.TU.Chr16.2164 rna-evm.model.Chr16.2164 Chr16 64554677 64559397 PREDICTED: Sialin GO:0016020;GO:0055085 K12301
gene-evm.TU.Chr16.2166 rna-evm.model.Chr16.2166 Chr16 64570681 64576766 PREDICTED: Aquaporin-10 GO:0015267;GO:0016020;GO:0055085 K09878
gene-evm.TU.Chr16.2167 rna-evm.model.Chr16.2167 Chr16 64592962 64594369 PREDICTED: histone-lysine N-methyltransferase SETMAR [EC:2.1.1.43] nan nan

For more detailed data, you can explore the Download section to access the full dataset.