CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.2143 rna-evm.model.Chr16.2143 Chr16 63870823 63883518 PREDICTED: Fucolectin-3 nan K08259
gene-evm.TU.Chr16.2144 rna-evm.model.Chr16.2144 Chr16 63888829 63899981 PREDICTED: 6-pyruvoyl tetrahydrobiopterin synthase nan K01737
gene-evm.TU.Chr16.2145 rna-evm.model.Chr16.2145.14 Chr16 63903519 63937173 PREDICTED: E3 ubiquitin-protein ligase TRIM56 GO:0008270 K12026
gene-evm.TU.Chr16.2146 rna-evm.model.Chr16.2146.1 Chr16 63942131 63972869 PREDICTED: Ataxin-2 nan K23625
gene-evm.TU.Chr16.2149 rna-evm.model.Chr16.2149 Chr16 64025069 64042226 PREDICTED: dentin sialophosphoprotein nan K17046
gene-evm.TU.Chr16.215 rna-evm.model.Chr16.215 Chr16 6965571 6967608 PREDICTED: importin-4 nan K11703
gene-evm.TU.Chr16.2150 rna-evm.model.Chr16.2150 Chr16 64054870 64069396 PREDICTED: NADPH--cytochrome P450 reductase GO:0010181;GO:0016491;GO:0055114 K00327
gene-evm.TU.Chr16.2151 rna-evm.model.Chr16.2151 Chr16 64086496 64121074 uncharacterized protein nan nan
gene-evm.TU.Chr16.2152 rna-evm.model.Chr16.2152 Chr16 64222845 64247296 PREDICTED: T-complex protein 1 subunit zeta GO:0005524 K09498
gene-evm.TU.Chr16.2154 rna-evm.model.Chr16.2154 Chr16 64261998 64308504 PREDICTED: Squamous cell carcinoma antigen recognized by T-cells 3 GO:0003676;GO:0006396 K22611

For more detailed data, you can explore the Download section to access the full dataset.