CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.2497 rna-evm.model.Chr1.2497 Chr1 78258072 78266000 PREDICTED: NudC domain-containing protein 2 nan K25866
gene-evm.TU.Chr1.2498 rna-evm.model.Chr1.2498 Chr1 78268411 78280408 PREDICTED: Protein Jade-3 nan K22156
gene-evm.TU.Chr1.2499 rna-evm.model.Chr1.2499 Chr1 78291391 78294788 PREDICTED: Glyoxylate reductase/hydroxypyruvate reductase GO:0016616;GO:0051287;GO:0055114 K00049
gene-evm.TU.Chr1.2500 rna-evm.model.Chr1.2500 Chr1 78300145 78302575 PREDICTED: Toll-like receptor 4 GO:0005515;GO:0007165 K10160
gene-evm.TU.Chr1.2501 rna-evm.model.Chr1.2501 Chr1 78337765 78338847 PREDICTED: Glyoxylate reductase/hydroxypyruvate reductase GO:0016616;GO:0051287;GO:0055114 K00049
gene-evm.TU.Chr1.2502 rna-evm.model.Chr1.2502 Chr1 78363847 78367697 uncharacterized protein GO:0005506;GO:0016491;GO:0016705;GO:0031418;GO:0055114 K00472
gene-evm.TU.Chr1.2503 rna-evm.model.Chr1.2503 Chr1 78367787 78375914 PREDICTED: protein quiver-like nan K19894
gene-evm.TU.Chr1.2504 rna-evm.model.Chr1.2504 Chr1 78380614 78389602 PREDICTED: Dolichyl-phosphate beta-glucosyltransferase nan K00729
gene-evm.TU.Chr1.2505 rna-evm.model.Chr1.2505 Chr1 78402162 78409817 PREDICTED: Post-GPI attachment to proteins factor 2-like GO:0000139 K23552
gene-evm.TU.Chr1.2506 rna-evm.model.Chr1.2506 Chr1 78413714 78442114 PREDICTED: Bardet-Biedl syndrome 7 protein homolog nan K16749

For more detailed data, you can explore the Download section to access the full dataset.