CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.2130 rna-evm.model.Chr16.2130 Chr16 63685772 63705001 PREDICTED: Asparagine-rich protein nan K06240
gene-evm.TU.Chr16.2132 rna-evm.model.Chr16.2132 Chr16 63721160 63767455 uncharacterized protein nan nan
gene-evm.TU.Chr16.2134 rna-evm.model.Chr16.2134 Chr16 63775427 63781134 PREDICTED: 6-pyruvoyl tetrahydrobiopterin synthase GO:0005216;GO:0005249;GO:0006811;GO:0006813;GO:0008076;GO:0016020;GO:0051260;GO:0055085 K04887
gene-evm.TU.Chr16.2135 rna-evm.model.Chr16.2135 Chr16 63793050 63794591 PREDICTED: Fucolectin nan nan
gene-evm.TU.Chr16.2137 rna-evm.model.Chr16.2137 Chr16 63809720 63810232 PREDICTED: 6-pyruvoyl tetrahydrobiopterin synthase nan K01737
gene-evm.TU.Chr16.2138 rna-evm.model.Chr16.2138 Chr16 63819962 63822476 PREDICTED: Fucolectin nan nan
gene-evm.TU.Chr16.2139 rna-evm.model.Chr16.2139 Chr16 63826719 63827060 PREDICTED: 6-pyruvoyl tetrahydrobiopterin synthase nan K01737
gene-evm.TU.Chr16.214 rna-evm.model.Chr16.214 Chr16 6926293 6962717 PREDICTED: Leucine-rich repeat-containing protein 43 GO:0005515 K16475
gene-evm.TU.Chr16.2141 rna-evm.model.Chr16.2141 Chr16 63833481 63859082 PREDICTED: Potassium voltage-gated channel subfamily B member 1 GO:0005216;GO:0005249;GO:0005515;GO:0006811;GO:0006813;GO:0008076;GO:0016020;GO:0051260;GO:0055085 K04887
gene-evm.TU.Chr16.2142 rna-evm.model.Chr16.2142 Chr16 63863679 63865630 PREDICTED: 6-pyruvoyl tetrahydrobiopterin synthase nan K01737

For more detailed data, you can explore the Download section to access the full dataset.