CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.2098 rna-evm.model.Chr16.2098 Chr16 63157857 63162182 PREDICTED: Putative ankyrin repeat protein FPV162 GO:0005515 K15503
gene-evm.TU.Chr16.21 rna-evm.model.Chr16.21 Chr16 623570 636642 uncharacterized protein nan K08286
gene-evm.TU.Chr16.2100 rna-evm.model.Chr16.2100 Chr16 63196425 63216060 PREDICTED: CD109 antigen GO:0004866;GO:0005615 K06530
gene-evm.TU.Chr16.2101 rna-evm.model.Chr16.2101 Chr16 63216602 63220984 PREDICTED: CD109 antigen GO:0005576 K06530
gene-evm.TU.Chr16.2102 rna-evm.model.Chr16.2102 Chr16 63225667 63235135 PREDICTED: Probable serine/threonine-protein kinase pats1 GO:0003924;GO:0005515;GO:0005525;GO:0007165 K08844
gene-evm.TU.Chr16.2103 rna-evm.model.Chr16.2103 Chr16 63238883 63249243 PREDICTED: Ras-related protein Rab-8B GO:0003924;GO:0005515;GO:0005525;GO:0007165 K07902
gene-evm.TU.Chr16.2104 rna-evm.model.Chr16.2104 Chr16 63249256 63286896 PREDICTED: Carbohydrate sulfotransferase 11 GO:0008146;GO:0016020;GO:0016051 K01017
gene-evm.TU.Chr16.2105 rna-evm.model.Chr16.2105 Chr16 63302665 63322331 PREDICTED: Microprocessor complex subunit DGCR8 GO:0003723;GO:0020037;GO:0031053;GO:0042802;GO:0070877 K18419
gene-evm.TU.Chr16.2106 rna-evm.model.Chr16.2106 Chr16 63327453 63330500 PREDICTED: Cytochrome c oxidase subunit 6A, mitochondrial GO:0004129;GO:0005743;GO:0005751 K02266
gene-evm.TU.Chr16.2107 rna-evm.model.Chr16.2107 Chr16 63338231 63346144 PREDICTED: Ubiquitin-conjugating enzyme E2 L3 nan K04552

For more detailed data, you can explore the Download section to access the full dataset.