CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.2108 rna-evm.model.Chr16.2108 Chr16 63410686 63428074 uncharacterized protein nan K25265
gene-evm.TU.Chr16.212 rna-evm.model.Chr16.212 Chr16 6898995 6904387 PREDICTED: IgGFc-binding protein nan nan
gene-evm.TU.Chr16.2120 rna-evm.model.Chr16.2120 Chr16 63467993 63468415 PREDICTED: tripartite motif-containing protein 2/3 nan K26041
gene-evm.TU.Chr16.2123 rna-evm.model.Chr16.2123 Chr16 63474625 63474951 PREDICTED: Apoptosis inhibitor IAP nan K16061
gene-evm.TU.Chr16.2124 rna-evm.model.Chr16.2124 Chr16 63475995 63478212 PREDICTED: methylthioribose-1-phosphate isomerase [EC:5.3.1.23] nan K19200
gene-evm.TU.Chr16.2125 rna-evm.model.Chr16.2125 Chr16 63481653 63484241 uncharacterized protein nan K19200
gene-evm.TU.Chr16.2126 rna-evm.model.Chr16.2126 Chr16 63491254 63529655 PREDICTED: GPI ethanolamine phosphate transferase 1 GO:0003824;GO:0005789;GO:0006506;GO:0016740;GO:0051377 K05285
gene-evm.TU.Chr16.2127 rna-evm.model.Chr16.2127 Chr16 63560812 63593466 PREDICTED: GATOR complex protein WDR24 GO:0005515;GO:0032008 K20408
gene-evm.TU.Chr16.2128 rna-evm.model.Chr16.2128.1 Chr16 63629977 63672516 PREDICTED: Solute carrier family 13 member 1 GO:0005215;GO:0016020;GO:0055085 K14445
gene-evm.TU.Chr16.2129 rna-evm.model.Chr16.2129 Chr16 63680738 63682542 PREDICTED: Carbohydrate sulfotransferase 11 GO:0008146;GO:0016020;GO:0016051 K09673

For more detailed data, you can explore the Download section to access the full dataset.