CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.2084 rna-evm.model.Chr16.2084 Chr16 62934755 62949426 PREDICTED: N-lysine methyltransferase setd6 GO:0005515 K05302
gene-evm.TU.Chr16.2085 rna-evm.model.Chr16.2085 Chr16 62954276 62977586 PREDICTED: Sterile alpha and TIR motif-containing protein 1 GO:0005515;GO:0007165;GO:0034128;GO:0035591;GO:0048678 K15684
gene-evm.TU.Chr16.2088 rna-evm.model.Chr16.2088 Chr16 63026595 63032517 PREDICTED: UPF0390 protein zgc136864 nan nan
gene-evm.TU.Chr16.2089 rna-evm.model.Chr16.2089.1 Chr16 62998006 63059445 PREDICTED: Sterile alpha and TIR motif-containing protein 1 GO:0005515;GO:0007165;GO:0034128;GO:0035591;GO:0048678 K15684
gene-evm.TU.Chr16.209 rna-evm.model.Chr16.209 Chr16 6840741 6882226 PREDICTED: odorant receptor nan K07488
gene-evm.TU.Chr16.2090 rna-evm.model.Chr16.2090 Chr16 63080255 63090215 PREDICTED: Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B GO:0005515 K15503
gene-evm.TU.Chr16.2091 rna-evm.model.Chr16.2091 Chr16 63092719 63095041 uncharacterized protein nan K10634
gene-evm.TU.Chr16.2095 rna-evm.model.Chr16.2095 Chr16 63132076 63132890 PREDICTED: Fc receptor-like protein nan K07357
gene-evm.TU.Chr16.2096 rna-evm.model.Chr16.2096 Chr16 63132981 63136538 PREDICTED: Enzymatic polyprotein nan K06245
gene-evm.TU.Chr16.2097 rna-evm.model.Chr16.2097 Chr16 63153144 63156158 PREDICTED: E3 SUMO-protein ligase NSE2 GO:0000724;GO:0008270;GO:0019789;GO:0030915 K22756

For more detailed data, you can explore the Download section to access the full dataset.