CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.2073 rna-evm.model.Chr16.2073 Chr16 62828334 62830790 PREDICTED: Tripartite motif-containing protein 45 GO:0008270 K12026
gene-evm.TU.Chr16.2074 rna-evm.model.Chr16.2074 Chr16 62838185 62840387 PREDICTED: Tripartite motif-containing protein 45 GO:0008270 K12026
gene-evm.TU.Chr16.2075 rna-evm.model.Chr16.2075 Chr16 62849772 62851943 PREDICTED: E3 ubiquitin-protein ligase TRIM56 GO:0008270 K12026
gene-evm.TU.Chr16.2076 rna-evm.model.Chr16.2076 Chr16 62860803 62871801 PREDICTED: Required for meiotic nuclear division protein 1 homolog nan K23499
gene-evm.TU.Chr16.2078 rna-evm.model.Chr16.2078 Chr16 62875242 62878647 PREDICTED: cysteine/serine-rich nuclear protein nan nan
gene-evm.TU.Chr16.208 rna-evm.model.Chr16.208 Chr16 6828367 6829476 uncharacterized protein nan K11985
gene-evm.TU.Chr16.2080 rna-evm.model.Chr16.2080 Chr16 62880486 62885026 PREDICTED: Bis(5'-nucleosyl)-tetraphosphatase PrpE [asymmetrical] GO:0016787 K07313
gene-evm.TU.Chr16.2081 rna-evm.model.Chr16.2081 Chr16 62885919 62888238 PREDICTED: Ketohexokinase nan K00846
gene-evm.TU.Chr16.2082 rna-evm.model.Chr16.2082 Chr16 62895458 62908572 PREDICTED: Ubiquitin-conjugating enzyme E2 G1 nan K10575
gene-evm.TU.Chr16.2083 rna-evm.model.Chr16.2083 Chr16 62916844 62930659 PREDICTED: Ketosamine-3-kinase nan K15522

For more detailed data, you can explore the Download section to access the full dataset.